Alien invasions and gut "island biogeography"

DeLong EF. Alien invasions and gut "island biogeography". Cell. 2014 Oct 9;159(2):233-5. ncbi page

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages.

Ottesen EA, Young CR, Gifford SM, Eppley JM, Marin R 3rd, Schuster SC, Scholin CA, DeLong EF. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. 2014. Science 345:207-12. doi: 10.1126/science.1252476. ncbi page dowload pdf

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Lincoln SA, Wai B, Eppley JM, Church MJ, Summons RE, DeLong EF. 2014. Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean. Proc Natl Acad Sci U S A. 111:9858-63. doi: 10.1073/pnas.1409439111. ncbi page dowload pdf

Deep-water anoxygenic photosythesis in a ferruginous chemocline.

Crowe SA, Maresca JA, Jones C, Sturm A, Henny C, Fowle DA, Cox RP, Delong EF, Canfield DE. 2014. Deep-water anoxygenic photosythesis in a ferruginous chemocline. Geobiology. 12:322-39. doi: 10.1111/gbi.12089.
ncbi page dowload pdf

Closely related phytoplankton species produce similar suites of dissolved organic matter.

Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ. 2014. Closely related phytoplankton species produce similar suites of dissolved organic matter. Front Microbiol. 2014 Mar 28;5:111. doi:
10.3389/fmicb.2014.00111. ncbi page dowload pdf

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.

Yoshizawa S, Kumagai Y, Kim H, Ogura Y, Hayashi T, Iwasaki W, Delong EF, Kogure K. 2014. Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria. Proc Natl Acad Sci U S A. 2014 Mar 31. [Epub ahead of print] PubMed PMID: 24706784.
ncbi page dowload pdf

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Thrash CJ, Temperton B, Swan BK, Landry ZC, Woyke T, Delong EF, Stepanauskas R, Giovannoni SJ. 2014. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. ISME J. 2014 Jan 23. doi: 10.1038/ismej.2013.243.
ncbi page download pdf

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria

Martínez A, Ventouras LA, Wilson ST, Karl DM, Delong EF. Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria. 2013. Front Microbiol. Nov 26;4:340. PubMed PMID: 24324460.
ncbi page download pdf

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

Sharma AK, Becker JW, Ottesen EA, Bryant JA, Duhamel S, Karl DM, Cordero OX, Repeta DJ, Delong EF. 2013. Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade. Environ Microbiol. 2013 Aug 23. doi: 10.1111/1462-2920.12254.
ncbi page download pdf

Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics

DeLong EF. Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics. Methods Enzymol. 2013;531:xxi. doi: 10.1016/B978-0-12-407863-5.09983-4.
ncbi page

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

Ganesh S, Parris DJ, Delong EF, Stewart, FJ. 2013. Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone. ISME J. 2013 Sep 12. doi: 10.1038/ismej.2013.144.
ncbi page download pdf

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR. 2013. Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts. ISME J. doi: 10.1038/ismej.2013.45. [ncbi page] [download pdf]

Microbial Earth: the motion picture

DeLong, E. F. 2013. Microbial Earth: the motion picture. Environmental Microbiology Reports 5:2-4 [ncbi page not available] [download pdf]

Pattern and synchrony of gene expression among sympatric marine microbial populations

Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, Scholin CA, DeLong EF. 2013. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proc Natl Acad Sci U S A. Feb 5;110(6):E488-97. doi:
10.1073/pnas.1222099110. [ncbi page] [download pdf]

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

Cordero OX, Ventouras LA, Delong EF, Polz MF. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20059-64. doi: 10.1073/pnas.1213344109. Epub 2012 Nov 19. [ncbi page] [download pdf]

Oxygen minimum zones harbour novel viral communities with low diversity

Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA. Oxygen minimum zones harbour novel viral communities with low diversity. Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5. [ncbi page] [download pdf]

Microbial oceanography of anoxic oxygen minimum zones

Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ. Microbial oceanography of anoxic oxygen minimum zones. Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. doi: 10.1073/pnas.1205009109. Epub 2012 Sep 11. [ncbi page] [pdf coming soon]

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

Bryant JA, Stewart FJ, Eppley JM, DeLong EF. Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology. 2012 Jul;93(7):1659-73. [ncbi page] [pdf coming soon]

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

Stewart FJ, Dalsgaard T, Young CR, Thamdrup B, Revsbech NP, Ulloa O, Canfield DE, Delong EF. 2012. Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton. PLoS One. 2012;7(5):e37118. Epub 2012 May 16. [ncbi page] [pdf coming soon]

PhnY and PhnZ Comprise a New Oxidative Pathway for Enzymatic Cleavage of a Carbon-Phosphorus Bond

Fern R. McSorley, Peter Wyatt, Asuncion Martinez, Edward F. DeLong, Bjarne Hove-Jensen, and David L. Zechel. 2012. PhnY and PhnZ Comprise a New Oxidative Pathway for Enzymatic Cleavage of a Carbon-Phosphorus Bond. J. Am. Chem. Soc., 2012, 134 (20), pp 8364–8367.
DOI: 10.1021/ja302072f. [ncbi page] [pdf coming soon]

Microbial microevolution in the wild

DeLong, E. F. 2012. Microbial microevolution in the wild. Science. 2012 Apr 27; 336(6080):462-6. [ncbi page] [pdf coming soon]

Comparison of large-insert, small-insert, and pyrosequencing libraries for metagenomic analysis

Danjorn, T., Young C. R., and E. F. DeLong. 2012. Comparison of large-insert, small-insert, and pyrosequencing libraries for metagenomic analysis. ISME J. 2012 Apr 26. doi: 10.1038/ismej.2012.35. (Epub ahead of print) [ncbi page] [pdf coming soon]

Phosphite utilization by the marine picocyanobacterium Prochlorococcus marinus MIT9301

Martinez, A., Osbourne, M., DeLong, E.F., and S.W. Chisholm. 2011. Phosphite utilization by the marine picocyanobacterium Prochlorococcus marinus MIT9301, Environ. Micro. [ncbi page] [download pdf]

Transcriptional responses to simulated upwelling in open ocean microbial assemblages

Shi, Y., McCarren, J. and E. F. DeLong. 2011. Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment. Environ Microbiol. Oct 9. doi: 10.1111/j.1462-2920.2011.02598.x. [ncbi page] [download pdf]

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean

B. K. Swan, M. Martinez-Garcia, C. M. Preston, A. Sczyrba, T. Woyke, D. Lamy, T. Reinthaler, N. J. Poulton, E. D. P. Masland, M. Lluesma Gomez, M. E. Sieracki, E. F. DeLong, G. J. Herndl, and R. Stepanauskas. 2011. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 333:1296-1300. [ncbi page] [download pdf]

Complete genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Grote, J., Altunkaya, A., Bayindirl, .C, Bergauer, K., Carpintero de Moraes’ P., Chen, H., D’Ambrosio, L., Edwards, B., Fernández-Gómez, B., Hamisi, M., Logares, R., Nguyen, D., Rii,, S., Saeck, E., Schutte, C., Widner, B., Church, M.J., Steward, G. F., Karl, D.M., DeLong, E.F., Eppley, J.M., Schuster, S., Kyrpides, N.C., and M. S. Rappé. 2011. Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Stds. Genome Sci. [ncbi page] [pdf coming soon]

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

Ottesen. E., Marin III, R., Preston, C., Young, C. R., Ryan, J. P., Scholin C. A., and E. F. DeLong. 2011. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. ISME J. [ncbi page] [download pdf]

Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum

Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM. 2011. Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Front Microbiol. 2:134. [ncbi page] [download pdf]

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

Shi, Y., Tyson, G. W, Eppley, J. and E. F. DeLong. 2011. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. [ncbi page] [download pdf]

Light-induced transcriptional responses associated with proteorhodopsin enhanced growth in a marine flavobacterium

Kimura, H., Martinez, A. and E. F. DeLong. 2011. Light-induced transcriptional responses associated with proteorhodopsin enhanced growth in a marine flavobacterium. ISME J. PMID: 21472017. [ncbi page] [download pdf]

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

Stewart, F., Sharma, A. Bryant, J., Eppley, J.M., and E. F. DeLong. 2011. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities, Genome Biology, 12:R26 DOI:10.1186/gb-2011-12-3-r26. [ncbi page] [download pdf]

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

F. J. Stewart, O. Ulloa and E. F. DeLong. 2011. Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environ. Microbiol. DOI: 10.1111/j.1462-2920.2010.02400. [ncbi page] [download pdf]

Time-series analyses of Monterey Bay coastal microbial picoplankton using a “genome proxy” microarray

Rich, V. Pham, J. Eppley, Y. Shi, and E.F. DeLong. 2011. Time-series analyses of Monterey Bay coastal microbial picoplankton using a “genome proxy” microarray. Environ. Microbiol. 13:116-134. [ncbi page] [download pdf]

A cryptic sulfur cycle in oxygen-minimum–zone waters off the Chilean coast

Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, DeLong EF, Revsbech NP, Ulloa O. 2010. A cryptic sulfur cycle in oxygen-minimum–zone waters off the Chilean coast. Science. 330:1375-1378. [ncbi page] [pdf coming soon]

Meeting Report: BioSharing at ISMB 2010

Meeting Report: BioSharing at ISMB 2010. Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, Bramlett B, Gregurick S, Lapp H, Orchard S, Rocca-Serra P, Ruttenberg A, Shah N, Taylor C, Thessen A. Stand. Genomic Sci. 2010 Dec. 4:254-258. [ncbi page] [pdf coming soon]

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010. Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O. Stand. Genomic Sci. 2010; 3:232-1234. [ncbi page] [pdf coming soon]

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

McCarren, J., Becker, J., Repeta, D., Shi, Y., C.R. Young, Malmstrom, R. Chisholm P., and E. F. DeLong. 2010. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea, PNAS, 107:16420-16427. [ncbi page] [download pdf]

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

Stewart, F. J., Ottesen E. A., and E. F. DeLong. 2010. Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics, ISME J. 4:896-907 [ncbi page] [download pdf]

Interesting things come in small packages

DeLong, E. F. 2010. Interesting things come in small packages: Population metagenomics reveals the stripped-down genome of an unusual marine nitrogen-fixing cyanobacterium. Genome Biology 11:118 [ncbi page] [download pdf]

Climate change and the integrity of science

Gleick, PH et al, 2010. Climate change and the integrity of science. Science. 328:689-90. [ncbi page] [download pdf]

The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times

DeLong E.F. and O. Béjà O. 2010. The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times. PLoS Biol 8(4):e1000359. DOI:10.1371/journal.pbio.1000359. [ncbi page] [download pdf]

Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses

Martinez, A., Tyson, G. W. and E. F. DeLong. 2010. Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environ. Microbiol. 12:222-238. [ncbi page] [pdf coming soon]

Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium

Maresca, J., Braff, J.C., and E. F. DeLong. 2009. Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium. Environ. Microbiol. 1:524-534 [ncbi page not available] [pdf coming soon]

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean

Church, M.J., Wai, B., Karl, D.M. and E. F. DeLong. 2009. Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environ. Microbiol. 12:679-688 [ncbi page] [download pdf]

Comparative metagenomic analysis of an abyssal microbial community from 4000 m deep at Station ALOHA in the North Pacific Ocean

Konstantinidis, K., Braff, J., Karl, D. M. and E. F. DeLong. 2009. Comparative metagenomic analysis of an abyssal microbial community from 4000 m deep at Station ALOHA in the North Pacific Ocean. Appl. Environ. Microbiol. 75:5345-5355. [ncbi page] [pdf coming soon]

Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column

Shi, Y., Tyson, G. W., and E. F. DeLong. 2009. Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column. Nature 459:266-269. [ncbi page] [pdf coming soon]

The microbial ocean from genomes to biomes

DeLong, E. F. 2009. The microbial ocean from genomes to biomes. Nature 459:200-206. [ncbi page] [pdf coming soon]

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes

Preston, C. M., Marin, R., Jensen, S. D.. Feldman, J. Birch, J. M. Massion, E. I., DeLong, E. F., , Suzuki, M., Wheeler, K., and C. A. Scholin. 2009. Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environ. Microbiol. 11:1168-80 [ncbi page] [pdf coming soon]

Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods

Pham VD, Hnatow LL, Zhang S, Fallon RD, Jackson SC, Tomb JF, DeLong EF, Keeler SJ. 2009. Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environ Microbiol. 11:176-87. [ncbi page] [pdf coming soon]

Genomic patterns of recombination, clonal divergence, and environment in marine microbial populations

Konstantinidis, K. and E. F. DeLong. 2008. Genomic patterns of recombination, clonal divergence, and environment in marine microbial populations, ISME J, 2:1052-1065. [ncbi page] [pdf coming soon]

Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre

Pham, V. D., Konstantinidis , K.T. , Palden, T. and E F. DeLong. 2008. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environ. Microbiol., 10:2313-30. [ncbi page] [pdf coming soon]

Aerobic production of methane in the sea

Karl, D. M., Beversdorf, L., Björkman, K., Church, M., Martinez, A. and DeLong, E. F. 2008. Aerobic production of methane in the sea. Nature Geosci, 1:473 - 478 [ncbi page not available] [pdf coming soon]

The microbial engines that drive biogeochemical cycles

Falkowski, P. D., Fenchel, T. and E. F. DeLong. 2008. The microbial engines that drive biogeochemical cycles. Science, 320:1034-1038 [ncbi page] [pdf coming soon]

Microbial community gene expression in ocean surface waters

Frias-Lopez, J., Shi, Y., Tyson, G. W.,. Coleman, M.L., Schuster, S. C., Chisholm, S.W., and E. F. DeLong. 2008. Microbial community gene expression in ocean surface waters. Proc. Natl. Acad. Sci, U.S.A. 105:3805-3810. [ncbi page] [pdf coming soon]

Design and testing of “genome-proxy” microarrays to profile marine microbial communities

Rich, V. I., K. Konstantinidis and E. F. DeLong. 2008. Design and testing of “genome-proxy” microarrays to profile marine microbial communities. Environ. Microbiol. 10:506–521. [ncbi page] [pdf coming soon]

Low genomic diversity in tropical oceanic N2-fixing cyanobacteria

J. P. Zehr, S. R. Bench,1 E. A. Mondragon, J. McCarren and E. F. DeLong. 2007. Low genomic diversity in tropical oceanic N2-fixing cyanobacteria, Proc. Natl. Acad. Sci, U.S.A., 104:17807–17812 [ncbi page] [pdf coming soon]

Fosmids of novel marine Planctomycetes from the 1 Namibian and Oregon coast upwelling systems and their cross-comparison with one complete and four almost complete planctomycete genomes

Woebkena, D., Teeling, H., Weckerb, P, Dumitriuc, A., Kostadinovb, I., DeLong, E. F., Amann, R. and F. O. Glöckner. 2007. Fosmids of novel marine Planctomycetes from the 1 Namibian and Oregon coast upwelling systems and their cross-comparison with one complete and four almost complete planctomycete genomes. ISME J., 1:419-35. [ncbi page] [pdf coming soon]

Structure and function of cold shock proteins in archaea

Giaquinto L, Curmi PM, Siddiqui KS, Poljak A, DeLong E. F., Dassarma S, Cavicchioli R. 2007. Structure and function of cold shock proteins in archaea. J Bacteriol. 189:5738-5748. [ncbi page] [pdf coming soon]

Construction of BAC and fosmid libraries from naturally occurring microbial populations in Reddy and Schmidt

E. F. DeLong. 2007. Construction of BAC and fosmid libraries from naturally occurring microbial populations in Reddy and Schmidt ed., Methods for General and Molecular Microbiology, pp. 879-885, ASM Press, Washington D. C. [ncbi page not available] [pdf coming soon]

Life on the thermodynamic edge

E. F. DeLong. 2007. Life on the thermodynamic edge. Science 317:327-328. [ncbi page] [pdf coming soon]

Microbial domains in the ocean: A lesson from the Archaea

DeLong, E. F. 2007. Microbial domains in the ocean: A lesson from the Archaea, Oceanography 20:124-129 [ncbi page not available] [pdf coming soon]

Sea change for metagenomics

DeLong, E. F. 2007. Sea change for metagenomics, Nat Rev. Microbiol. 5:326. [ncbi page not available] [download pdf]

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

Mincer T. J., Church, M, J., Taylor, L. T., Preston, C. M., Karl, D. M., and DeLong, E. F. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ. Microbiol. 9:1162-1175. [ncbi page] [pdf coming soon]

Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla

McCarren, J. and E. F. DeLong. 2007. Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environ. Microbiol. 9:846-858. [ncbi page] [pdf coming soon]

Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

A. Martinez, A. Bradley, J. Waldbauer, R. Summons and E. F. DeLong. 2007. Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host. Proc. Natl Acad Sci. 104:5590-5595. [ncbi page] [pdf coming soon]

Genomic analysis of the uncultivated marine crenarchaeote, Cenarchaeum symbiosum

Hallam, S. J., Konstantinidis, K. T., Putnam, N., Schleper, C., Watanabe, Y., Sugahara, J., Preston, C. M., de la Torre, J, Richardson, P.R. and DeLong, E. F. 2006. Genomic analysis of the uncultivated marine crenarchaeote, Cenarchaeum symbiosum. Proc. Natl. Acad. Sci U.S.A. 103:18296-18301 [ncbi page] [pdf coming soon]

Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonucleas

Yoshinari S, Itoh T, Hallam SJ, DeLong EF, Yokobori S, Yamagishi A, Oshima T, Kita K, Watanabe Y. 2006. Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease. Biochem Biophys Res Commun. 346:1024-32. [ncbi page] [pdf coming soon]

Archaeal mysteries of the deep revealed

DeLong, E. F. 2006. Archaeal mysteries of the deep revealed. Proc Natl Acad Sci U S A. 103:6417-6418. [ncbi page] [pdf coming soon]

Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota

Hallam, S. J., Mincer, T., Roberts, K., Preston, C. M., Schleper, C., Detter, J. C., Richardson, P. M., and E. F. DeLong. 2006. Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota. PloS Biology, 4(4):e95. [ncbi page] [pdf coming soon]

Genomic islands and the ecology and evolution of Prochlorococcus

Coleman, M. L. Sullivan, M. B., Martiny , A. C., Steglich, C., Barry, K., DeLong, E. F., and S. W. Chisholm. 2006. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311:768-770. [ncbi page] [pdf coming soon]

Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria

Grzymski, J. J. Carter, B., DeLong, E.F. , Feldman, R. Ghadiri, A., and A. E. Murray. 2006. Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria. Appl. Environ. Microbiol 72:1532–1541 [ncbi page] [pdf coming soon]

Community genomics among stratified microbial assemblages in the ocean’s interior

DeLong, E. F., Preston, C. M.., Martinez, A., Mincer, T., Frigaard, N.U., Rich, V., Hallam, S. J., Sullivan, M., Edwards, R., Beltran, R.B., Chisholm, S. W., and D. M. Karl 2006. Community genomics among stratified microbial assemblages in the ocean’s interior. Science, 311:496-503. [ncbi page] [pdf coming soon]

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

Frigaard, N.U, Martinez, C., Mincer, T., E. F. DeLong. 2006. Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439:847-850. [ncbi page] [pdf coming soon]

Genomic perspectives in microbial oceanography

DeLong. E. F. and D. M. Karl. 2005. Genomic perspectives in microbial oceanography. Nature 437:336-342. [ncbi page] [pdf coming soon]

Histones in Crenarchaea

Cubonová, L., Sandman, K., Hallam, S. J. DeLong, E. F. and J. N. Reeve. 2005. Histones in Crenarchaea, J. Bacteriol. 187:5482-5485. [ncbi page] [pdf coming soon]

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissolute

Schirmer A., Gadkari, R., Reeves, C. D., Ibrahim, F, De Long, E. F., and Hutchinson, C. R. 2005. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissolute, Appl. Environ. Microbiol. 71:4840-4849. [ncbi page] [pdf coming soon]

Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate -reducing bacteria in a continuous flow bioreactor

Girguis P. R., A. Cozen and E. F. DeLong. 2005. Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate -reducing bacteria in a continuous flow bioreactor. Appl. Environ. Microbiol. 71:3725-3733. [ncbi page] [pdf coming soon]

Microbial community genomics in the ocean

DeLong, E. F. 2005. Microbial community genomics in the ocean. Nat Rev Microbiol. 3:459-69. [ncbi page] [pdf coming soon]

Microbial life breathes deep

DeLong, E. F. 2004. Microbial life breathes deep. Science 306:2198-2200. [ncbi page] [pdf coming soon]

Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay

Suzuki, M.T., Preston, C.M., Béjà, O., de la Torre, J., Steward, G., and DeLong, E.F. 2004. Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay, Microbial Ecology, 48:473-488. [ncbi page] [pdf coming soon]

Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics

Hallam, S. J., Putnam, N.. Preston, C.M., Detter, J.C., Richardson, P. M., Rokhsar, D., and E. F. DeLong. 2004. Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics, Science, 305:1457-1462. [ncbi page] [pdf coming soon]

Microbial population genomics and ecology: the road ahead

DeLong, E. F. 2004. Microbial population genomics and ecology: the road ahead. Environ. Microbiol. 6:875–878. [ncbi page] [pdf coming soon]

Different SAR86 subgroups harbour divergent proteorhodopsins

Sabehi, G., Béjà, O., Suzuki, M.T., Preston, C.M. & E. F. DeLong. 2004. Different SAR86 subgroups harbour divergent proteorhodopsins, Environ. Microbiol. 6:903–910. [ncbi page] [pdf coming soon]

Microbial population genomics and ecology: a new frontier

DeLong E. F. 2004. Microbial population genomics and ecology: a new frontier. In Microbial Genomics, ed. C.M. Fraser, K. E. Nelson, T.D. Read, Human Press Inc., Totowa, N.J., pp 419-442. [ncbi page not available] [pdf coming soon]

Studying the Deep Subsurface biosphere: emerging technologies and applications

Cary, S.C., and Campbell, B.J., DeLong, E.F. 2004. Studying the Deep Subsurface biosphere: emerging technologies and applications. In The Subseafloor Biosphere at Mid-Ocean Ridges, Wilcock, W. W., DeLong, E. F., Kelley, D. S. and Cary, S. C., eds., AGU Press,. Washington D. C. pg. 383-399. [ncbi page not available] [pdf coming soon]

Reconstructing the wild types

DeLong, E. F., 2004. Reconstructing the wild types. Nature 428:25-26s [ncbi page] [pdf coming soon]

Pre-MIT Publications

DeLong, E. F. 2003. Oceans of archaea. ASM News, 69:503-511. [ncbi page not available] [pdf coming soon]

Church, M.J., DeLong, E.F., Ducklow, H.W., Karner, M.B., Preston, C.M., and D. M. Karl. 2003. Abundance and distribution of planktonic Archaea and Bacteria in the Western Antarctic Peninsula. Limnol. Oceanogr. 48:1893-1902. [ncbi page not available] [pdf coming soon]

de la Torre, J. R, Christianson, L.M., Béjà , O., Heidelberg, J., Karl D.M., and E. F. DeLong. 2003. Proteorhodopsin genes are distributed among divergent marine bacterial taxa.. Proc. Natl. Acad. Sci. U.S.A. 100:12830-12835. [ncbi page] [pdf coming soon]

Hallam S. J., P. R. Girguis, C. M. Preston, P. M. Richardson, and E. F. DeLong. 2003. Identification of Methyl Coenzyme M Reductase A (mcrA) genes in Methane Oxidizing Archaea. Appl. Environ. Microbiol. 69:5483–5491. [ncbi page] [pdf coming soon]

Girguis, P. R., V. Orphan And E. F. Delong. 2003. Enrichment Of Anaerobic Methane Oxidizing Archaeal/Bacterial Consortia In Deep-Sea Marine Sediments. Appl. Environ. Microbiol. 69:5472–5482. [ncbi page] [pdf coming soon]

Sabehi, G., Ramon M., Delong E. F. and O. Béjà. 2003. Novel Proteorhodopsin Variants from the Mediterranean and Red Seas, Environ. Microbiol. 5:842–849. [ncbi page] [pdf coming soon]

DeLong, E. F. 2003. A plentitude of microorganisms. Natural History Magazine, 112:40-46. [ncbi page not available] [pdf coming soon]

Zeidner, G. C. M. Preston, E. F. Delong, R. Massana, A. F. Post,, D. J. Scanlan, O. Béjà. 2003. Molecular diversity among marine picophytoplankton as revealed by psbA analyses. Environ. Microbiol. 5:212–216 [ncbi page] [pdf coming soon]

Orphan, V. J., J. Boles, S. K. Goffredi, and E. F. DeLong. 2002. Geochemical influence on microbial processes in high temperature oil reservoirs. Geomicrobiol. J. 20:1-17. [ncbi page not available] [pdf coming soon]

DeLong, E. F. 2002. It’s all in the packaging. Nature 419, 676 – 677. [ncbi page] [pdf coming soon]

DeLong E. F. 2002. Microbial population genomics and ecology. Curr. Op. Microbiol. 5:520-524 [ncbi page] [pdf coming soon]

DeLong E. F. and P. Chandler. 2002. Power from the deep. Nature Biotech. 20:788-789. [ncbi page] [pdf coming soon]

DeLong, E. F. 2002. Mille milliards de mille microbes. La Recherche 355:54-57. [ncbi page not available] [pdf coming soon]

V. J. Orphan, Christopher H. House, Kai-Uwe Hinrichs, Kevin D. McKeegan and Edward F. DeLong. 2002. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments, Proc. Natl. Acad. Sci, 99:7663-7668. [ncbi page] [pdf coming soon]

DeLong, E. F. 2002. Towards microbial systems science:integrating microbial perspectives, from genomes to biomes. Environ. Microbiol. 4:9-10. [ncbi page] [pdf coming soon]

Pernthaler, A,, C.M. Preston, J. Pernthaler, E. F. DeLong, and R. Amann. 2002. Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl. Environ. Microbiol. 68:661-667. [ncbi page] [pdf coming soon]

Béjà O., Suzuki, M. T., Heidelberg, J.F., Nelson, W.C., Preston, C.M., Hamada T., Eisen, J.A., Fraser, C., and E. F. DeLong. 2002. Unexpected diversity among marine aerobic anoxygenic phototrophs. Nature 415:630-633. [ncbi page] [pdf coming soon]

C. O. Wirsen, S. M. Sievert, C. M. Cavanaugh, S. J. Molyneaux, A. Ahmad,L. T. Taylor, E. F. DeLong, and C. D. Taylor. 2002. Characterization of an Autotrophic Sulfide-Oxidizing Marine Arcobacter sp. That Produces Filamentous Sulfur. Appl. Environ. Microbiol. 68:316–325. [ncbi page] [pdf coming soon]

Béjà O., E. V. Koonin, L. Aravind, L. T. Taylor, H. Seitz, J. L. Stein, D. C. Bensen, R. A. Feldman, R. V. Swanson, and E. F. DeLong. 2001. Comparative Genomic Analysis of Archaeal Genotypic Variants in a Single Population and in Two Different Oceanic Provinces. Appl. Environ. Microbiol. 68:335–345. [ncbi page] [pdf coming soon]

Orphan, V. J., C. House, K. U. Hinrichs, K. McKeegan, and E.F. DeLong. 2001. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293:484 487. [ncbi page] [pdf coming soon]

Béjà, O., E. N.. Spudich, J. L. Spudich, M. LeClerc, and E. F. DeLong. 2001. Proteorhodopsin phototrophy in the ocean. Nature 411:786-789. [ncbi page] [pdf coming soon]

Suzuki, M. T., Béjà, O., Taylor, L.T. and E. F. DeLong. 2001. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton, Environ. Microbiol. 3:323-331. [ncbi page] [pdf coming soon]

DeLong, E. F. and N. R. Pace. 2001. Environmental Diversity of Bacteria & Archaea, Systematic Biol. 50:1-9. [ncbi page] [pdf coming soon]

DeLong, E. F. 2001. Microbial seascapes revisited. Curr. Op. Microbiol. 4:290-295. [ncbi page] [pdf coming soon]

Orphan, V. J., K.-U., Hinrichs, W. Ussler III, C. K. Paull, L. T. Taylor, S. Sylva, J. M. Hayes and E. F. DeLong. 2001. Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Appl. Environ. Microbiol. 67:1922-1927. [ncbi page] [pdf coming soon]

Suzuki, M. T. , Preston, C. F. Chavez, and E. F. DeLong. 2001. Quantitative mapping of bacterioplankton populations in seawater:field tests across an upwelling plume in the Monterey Bay. Aquat. Microb. Ecol., 24:117-127. [ncbi page not available] [pdf coming soon]

Karner, M, E. F. DeLong, and D. M. Karl. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510. [ncbi page] [pdf coming soon]

DeLong, E. F. 2000. Extreme genomes, Genome Biology 1:reviews1029.1-1029.3 [ncbi page] [pdf coming soon]

Dawson, S. C., DeLong E. F. and N. R. Pace. 2000. Phylogenetic and Ecological Perspectives on Uncultured Crenarchaeota and Korarchaeota. In The Prokaryotes, Springer Verlag, Electronic publication. [ncbi page not available] [pdf coming soon]

Suzuki, M. T., L. T. Taylor, and E. F. DeLong. 2000. Quantitative analysis of small subunit ribosomal RNA genes in mixed microbial populations employing 5’ nuclease assays, Appl. Environ. Microbiol. 66:4605-4614. [ncbi page] [pdf coming soon]

DeLong, E. F. 2000. Resolving a methane mystery. Nature 407:577-579. [ncbi page] [pdf coming soon]

Béjà, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. B. Jovanovich, C. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich, and E. F. DeLong. 2000. Bacterial rhodopsin:evidence for a new type of phototrophy in the sea. Science 289:1902-1906. [ncbi page] [pdf coming soon]

Béjà, O., Suzuki, M. T., Koonin, E.V., Aravind, L., Hadd, A., Nguyen, L.P., Villacorta, R., Amjadi, M., Garrigues, C., Jovanovich, S.B., Feldman, R. and E. F. DeLong. 2000. Construction and analysis of Bacterial Artificial Chromosome libraries from a marine microbial assemblage, Environ. Microbiol. 2:516-529. [ncbi page] [pdf coming soon]

Massana, R., E. F. DeLong and C. Pedros-Alios. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66:1777-1787. [ncbi page] [pdf coming soon]

DeLong, E. F. 2000. A phylogenetic perspective on hyperthermophilic microorganisms, in Hyperthermophilic Enzymes, Methods in Enzymology series, Academic Press, 330:3-11. [ncbi page] [pdf coming soon]

Orphan, V. J., L. T. Taylor, D. Hafenbradl, and E. F. DeLong. 2000. Culture-dependent and -independent characterization of microbial assemblages associated with high temperature oil reservoirs. Appl. Environ. Microbiol. 66:700-711. [ncbi page] [pdf coming soon]

Suzuki, M. T. and E. F. DeLong. 2000. Marine prokaryote diversity, in Biodiversity of microbial life:foundation of the Earth’s Biosphere, Staley, J. T. and Reysenbach, A.L., eds, J. Wiley and Sons, Inc., N.Y., N.Y., pp. 209-234. [ncbi page not available] [pdf coming soon]

Murray, A. E, Blakis, A., Massana, R., Strawzewski, S. Passow, U., Alldredge, A. and E. F. DeLong. 1999. A time series assessment of planktonic archaeal variability in the Santa Barbara Channel. Aquat. Microb. Ecol. 20: 129-145. [ncbi page not available] [pdf coming soon]

DeLong, E.F., Taylor, L.T. , Marsh, T.L. and C.M. Preston. 1999. Visualization and enumeration of marine planktonic archaea and bacteria using polyribonucleotide probes and fluorescence in situ hybridization. Appl. Environ. Microbiol. 65:5554-5563. [ncbi page] [pdf coming soon]

Caron, DA; Lim, EL; Dennett, MR; Gast, RJ; Kosman, C; DeLong, EF. 1999. Molecular phylogenetic analysis of the heterotrophic Chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species. J. Phycol., 35:824-837. [ncbi page not available] [pdf coming soon]

A.E. Murray, K.Y. Wu, C.L. Moyer, D. M. Karl and E. F. DeLong. 1999. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean. Aquat. Microb. Ecol. 18: 263-273. [ncbi page not available] [pdf coming soon]

DeLong , E. F., Schleper, C., Feldman, R., and R. V. Swanson. 1999. Application of genomics for understanding the evolution of hyperthermophilic and nonthermophilic Crenarchaeota, Biol. Bull. 196:363-366. [ncbi page] [pdf coming soon]

K.-U. Hinrichs, J. M. Hayes, S. P. Sylva, P. G. Brewer, and E. F. DeLong, 1999. Methane-consuming archaea Molecular-isotopic and phylogenetic evidence, Nature 398:802-805. [ncbi page not available] [pdf coming soon]

DeLong, E. F. 1999. Diminutive cells in the oceans - unanswered questions, pp. 81-84, In Size Limits of Very Small Microorganisms: Proceedings of a Workshop, Steering Group on Astrobiology of the Space Studies Board, National Research Council, 1999. [ncbi page not available] [pdf coming soon]

DeLong, E. F. 1999. The planetary crucible: Bacterial biogeochemistry. Trends Microbiol, 7:133-134. (book review). [ncbi page not available] [pdf coming soon]

Sandler, S. J., Hugenholtz, P., Schleper, C., DeLong, E. F. Pace, N. R., and A. J. Clark. 1999. Diversity of radA genes from cultured and uncultured Archaea: comparative analysis of their putative RadA proteins and their use as a phylogenetic marker. J. Bacteriol., 181:907-915. [ncbi page] [pdf coming soon]

DeLong, E. F. 1998. Everything in moderation: Archaea as "nonextremophiles" Curr. Opin. Genet. Develop. 8:649-654. [ncbi page] [pdf coming soon]

DeLong E. F. 1998. Novel niches. Trends Microbiol. 6:416 (book review). [ncbi page not available] [pdf coming soon]

Schleper, C., Preston, C. M. , Feldman, R. A., Ke Ying Wu, E. F. DeLong, and R. V. Swanson. 1998. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum, J. Bacteriol. 180:5003-5009. [ncbi page not available] [pdf coming soon]

Massana, R., Taylor, T., Murray, A., Jeffrey, W., and E. F. DeLong. 1998. Distribution of marine planktonic archaea in the Gerlache Straight Antarctica during early Spring. Limnol. and Oceanog. 43:607-617. [ncbi page] [pdf coming soon]

Vergin, K. L, E. Urbach, J. L. Stein, E. F. DeLong, and S. J. Giovannoni. 1998. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to the Planctomycetales. Appl. Environ. Microbiol. 64:3075-3078. [ncbi page] [pdf coming soon]

DeLong. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters off Anvers Island, Antarctica. Appl. Environ. Microbiol. 64:2585-2595. [ncbi page] [pdf coming soon]

Murray, A. E., C. M. Preston,. R. Massana, L. T. Taylor, A. Blakis, K. Y. Wu and E. F. DeLong. 1998. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters off Anvers Island, Antarctica. Appl. Environ. Microbiol. 64:2585-2595. [ncbi page] [pdf coming soon]

Rath, J., K. Y. Wu, G. J. Herndl and E. F. DeLong. 1998. High phylogenetic diversity in a marine snow-associated bacterial assemblage. Aquatic Microbial Ecology 14:261-269. [ncbi page] [pdf coming soon]

DeLong, E. F. 1998. Archaeal means and extremes. Science 280:542-543. [ncbi page] [pdf coming soon]

E. F. DeLong, L. L. King, R. Massana, H. Cittone, A. Murray, C. Schleper and S. G. Wakeham. 1998. Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes. Appl. Environ. Microbiol. 64:1133-1138. [ncbi page] [pdf coming soon]

Hovanec, T. A., L. T. Taylor,. A. Blakis, and E. F. DeLong. 1998. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Appl. Environ. Microbiol. 64:258-264. [ncbi page] [pdf coming soon]

DeLong, E. F. 1997. Molecular phylogenetics: new perspective on the ecology, evolution, and biodiversity of marine organisms, In Molecular Approaches in the Study of the Ocean, K. Cooksey, ed., Chapman and Hall, pp. 1-27. [ncbi page] [pdf coming soon]

Schleper, C. Swanson, R. V., Mathur, E. J., and E. F. DeLong. 1997. Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 179:7803-7811. [ncbi page] [pdf coming soon]

DeLong, E. F., D. G. Franks, and A. A. Yayanos. 1997. Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria. Appl. Environ. Microbiol. 63:2105 - 2108. [ncbi page] [pdf coming soon]

DeLong, E. F. 1997. Marine microbial diversity: the tip of the iceberg. Trends Biotechnol.,15:203-207. [ncbi page] [pdf coming soon]

Massana, R., A. E. Murray, K. Y. Wu, and E. F. DeLong. 1997. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63:50-56. [ncbi page] [pdf coming soon]

Hovanec, T. A. and E. F. DeLong. 1996. Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Appl. Environ. Microbiol., 62:2888-2896. [ncbi page] [pdf coming soon]

Preston, C. M., K. Y. Wu, T. F. Molinski, and E. F. DeLong. 1996. A psychrophilic crenarchaeon inhabits a marine sponge; Cenarchaeum symbiosum, gen. nov. sp.nov. Proc. Natl. Acad. Sci. USA, 93:6241-6246. [ncbi page] [pdf coming soon]

Lim, E. L, D. A. Caron and E. F. DeLong. 1996. Development and field application of a quantitative method for the examination of natural assemblages of protists using oligonucleotide probes, Appl. Environ. Microbiol. 62: 1416-1423. [ncbi page] [pdf coming soon]

Stein, J. , T. L. Marsh, K. Y. Wu, H. Shizuya, and E. F. DeLong. 1996. Characterization of uncultivated marine prokaryotes: isolation and analysis of a 40 kilobase genome fragment from a planktonic marine Crenarchaeote, J. Bacteriol. 178:591-599. [ncbi page] [pdf coming soon]

DeLong, E. F. 1995. Diversity of naturally-occurring prokaryotes: a beginning, In Microbial diversity in Space and Time, Plenum Press, pp. 125-133. [ncbi page] [pdf coming soon]

Brantley, S. E., T. F. Molinski, C. M. Preston, and E. F. DeLong. 1995. Brominated fatty acids from Xestospongia sp., a marine sponge-bacteria association. Tetrahedron 51: 7667-7672. [ncbi page] [pdf coming soon]

Butman, C.A., J. Carlton, G. W. Boehlert, S. H. Brawley, E. F. DeLong, J. F. Grassle, J. B. C. Jackson, S. L. Levin, A. R. M. Nowell, R. T. Paine, S. R. Palumbi, G. J. Veermeij, and L. Watling. 1995. Understanding Marine Biodiversity, National Academy Press. [ncbi page] [pdf coming soon]

DeLong, E. F., K. Y. Wu, B. B. Prezelin and R. V. M. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 37:695-697. [ncbi page] [pdf coming soon]

DeLong, E.F. 1994. Antarctic Microbiology. Science 263:401-402 (book review) [ncbi page] [pdf coming soon]

DiChristina, T. J., and E. F. DeLong. 1994 Isolation of anaerobic respiratory mutants of Shewanella putrefaciens and genetic analysis of mutants deficient in anaerobic growth on Fe3+, J. Bacteriol. 176:1468-1474. [ncbi page] [pdf coming soon]

DiChristina, T. J., and E. F. DeLong. 1993. Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens. Appl. Environ. Microbiol. 59:4152-4160. [ncbi page] [pdf coming soon]

Ledyard, K. M., E. F. DeLong and J. W. Dacey. 1993. Characterization of a DMSP-degrading bacterial isolate from the Sargasso Sea. Arch. Microbiol. 160:312-318. [ncbi page] [pdf coming soon]

Pace, N. R., E. R. Angert, E. F. DeLong, T. M. Schmidt and G. S. Wickham. 1993. New perspectives on the natural microbial world, in Genetics and molecular biology of industrial microorganisms-5, Hegeman, G. (ed.), ASM Press, pp. 77-84. [ncbi page] [pdf coming soon]

DeLong, E. F., D. G. Franks and A. L. Alldredge. 1993. Phylogenetic diversity of aggregate-attached versus free-living marine bacterial assemblages. Limnol. Oceanog. 38:924-934. [ncbi page] [pdf coming soon]

DeLong, E. F. 1993. Single cell identification using fluorescently labeled, ribosomal RNA specific probes. In Handbook of Methods in Aquatic Microbial Ecology, P. F. Kemp, B. F. Sherr, E. B. Sherr and J. J. Cole, eds, Lewis Pub., Ann Arbor, pp. 285-294. [ncbi page] [pdf coming soon]

Lim, E. L., L. A. Amaral, D. A. Caron and E. F. DeLong. 1993. Application of ribosomal RNA-based probes for observing marine nanoplanktonic protists. Appl. Environ. Microbiol. 59:1647-1655. [ncbi page] [pdf coming soon]

DeLong, E. F., R. B. Frankel and Dennis A. Bazylinski. 1993. Multiple evolutionary origins of magnetotaxis in bacteria. Science 259:803-806. [ncbi page] [pdf coming soon]

DeLong, E. F. and B. B. Ward. 1992. Molecular approaches in biological oceanography. Oceanus 35:47-54. [ncbi page] [pdf coming soon]

DeLong, E. F. 1992. Archaea in coastal marine environments, Proc. Natl. Acad. Sci. USA, 89: 5685-5689. [ncbi page] [pdf coming soon]

DeLong, E. F. 1992. Aquatic habitats: High Pressure Environments, in Joshua Lederberg, ed, Encyclopedia of Microbiology, Academic Press, Vol. 2, pp 405-417. [ncbi page] [pdf coming soon]

Schmidt, T. M. , E. F. DeLong and N. R. Pace. 1991. Phylogenetic identification of uncultivated microorganisms in natural habitats. In Rapid Methods and Automation in Microbiology and Immunology, A. Vaheri, R. C. Tilton, A. Balows, eds., Springer-Verlag, Berlin, pp. 37-46. [ncbi page] [pdf coming soon]

DeLong E. F. 1991. Molecular systematics, microbial ecology and single cell analysis. In Single Cell and Particle Analysis in Oceanography, S. Demerge, ed., NATO ASI Series, Springer-Verlag, Heidelberg, Vol. G27, pp. 237-257. [ncbi page] [pdf coming soon]

Distel, D., E. F. DeLong, and J. W. Waterbury. 1991. Phylogenetic characterization and in situ localization of the bacterial symbionts of shipworms by using 16S rRNA sequence analysis and oligodeoxynucleotide probe hybridization. Appl. Environ. Microbiol. 57:2376-2382 [ncbi page] [pdf coming soon]

Schmidt, T. M., E. F. DeLong and N. R. Pace. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173: 4371-4378. [ncbi page] [pdf coming soon]

Giovannoni, S. J., T. M. Schmidt, E. F. DeLong and N. R. Pace. 1990. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl. Environ. Microbiol. 56:2572-2575

DeLong E. F., T. M. Schmidt and N. R. Pace.1989. Analysis of single cells and oligotrophic picoplankton populations using 16S rRNA sequences, In Recent Advances in Microbial Ecology, T. Hattori, Y. Ishida, Y. Maruyama, R. Morita, and A. Uchida, eds., Japan Sci. Soc. Press, Tokyo, pp. 697-701. [ncbi page] [pdf coming soon]

DeLong E.F., G. Wickham, and N. R. Pace. 1989. Phylogenetic stains: Ribosomal RNA-based probes for identification of single microbial cells. Science 243:1360-1363. [ncbi page] [pdf coming soon]

Turner, S., E. F. DeLong, S. J. Giovannoni, G.J. Olsen and N. R. Pace. 1989. Phylogenetic analysis of organisms and natural populations using ribosomal RNA sequences. In Microbial Mats; Ecological Physiology of Benthic Microbial Communities, Y. Cohen and E. Rosenberg, eds., Am. Soc. Microbiol., pp. 390-401. [ncbi page] [pdf coming soon]

Giovannoni, S. J., E. F. DeLong, G. J. Olsen and N. R. Pace. 1988. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J. Bacteriol. 170: 720-726. [ncbi page] [pdf coming soon]

DeLong, E. F. and A. A. Yayanos. 1987. Properties of the glucose transport system in some deep-sea bacteria. Appl. Environ. Microbiol. 53:527-532. [ncbi page] [pdf coming soon]

Yayanos, A. A. and E. F. DeLong. 1987. Deep-sea bacterial fitness to environmental temperatures and pressures. In Current Perspectives in High Pressure Biology, H.W. Jannasch, R. E. Marquis, and A. M. Zimmerman, eds., pp.17-32, Academic Press, London. [ncbi page] [pdf coming soon]

DeLong, E. F., D. Steinhauer, A. Israel, and K. H. Nealson. 1987. Isolation of the lux genes from Photobacterium leiognathi and expression in Escherichia coli. Gene 54:203-210. [ncbi page] [pdf coming soon]

DeLong, E. F. and A. A. Yayanos. 1986. Biochemical function and ecological significance of novel bacterial lipids in deep-sea procaryotes. Appl. Environ. Microbiol. 51:730-737. [ncbi page] [pdf coming soon]

DeLong, E. F. and A.A. Yayanos. 1985. Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure. Science 228:1101-1103. [ncbi page] [pdf coming soon]

DeLong, E. F., L. Baumann, R. D. Bowditch, and P. Baumann. 1984. Evolutionary relationships of superoxide dismutases and glutamine synthetases from marine species of Alteromonas, Oceanospirillum, Pseudomonas and Deleya. Arch. Microbiol. 138:170-178 [ncbi page] [pdf coming soon]